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Sitemap
A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About Me
About me
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Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Megadepth: efficient coverage quantification for BigWigs and BAMs
Published in Bioinformatics, 2021
This paper presented a new efficient tool for quantifying coverage for BigWigs and BAMS called megadepth. This tool was developed by Christopher Wilks. I assisted in the benchmarking of the tool for the paper.
Recommended citation: Wilks, C., Ahmed, O., Baker, D. N., Zhang, D., Collado-Torres, L., & Langmead, B. (2021). Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinformatics (Oxford, England), btab152. https://doi.org/10.1093/bioinformatics/btab152
Pan-genomic Matching Statistics for Targeted Nanopore Sequencing
Published in iScience, 2021
This paper introduced a tool called SPUMONI which performs rapid, binary classification of reads with respect to a reference database. The tool is aimed toward the application of adaptive sequencing with Nanopore sequencers.
Recommended citation: Ahmed, O., Rossi, M., Kovaka, S., Schatz, M. C., Gagie, T., Boucher, C., & Langmead, B. (2021). Pan-genomic Matching Statistics for Targeted Nanopore Sequencing. iScience, 102696.
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.